Controls & Reference Materials

Seraseq® MSI Reference Panel Mix AF5%

Material Number 0710-1675
Size 2 x 15 µl
Inventory Status In Stock
Unit EA

Microsatellites are regions of DNA repeats with different lengths, i.e., instability, highlighting DNA mismatch repair gene deficiencies. Typical lengths for these DNA repeats are between 1-6 base pairs and vary person to person such that each person has a set length of these microsatellites in their genome. Measurements of MSI have traditionally been performed using qPCR/CE analysis methods, but new methodologies are now available that includes digital droplet PCR (ddPCR) as well as Next Generation Sequencing (NGS). Microsatellite instability status has been linked to favorable outcomes in I-O treatment response by patients with diseases such as Lynch Syndrome and colorectal cancer. Hence MSI measurements have become an important biomarker in immuno-oncology therapeutics.

LGC SeraCare has developed microsatellite instability (MSI) reference materials containing the key mono- and dinucleotide biomarkers typically analyzed in molecular MSI assays – NR-21, NR-24, BAT-25, BAT-26 and MONO-27. These markers are blended at two different allele frequency levels – AF5% and AF20% - to support MSI assay LoD determinations and accurate MSI detection. These products are offered as tumor-normal matched pairs, with variants precisely quantitated by digital PCR as well as qPCR/CE against a highly characterized genomic DNA from a background WT cell line (GM24385) determined as microsatellite stable (MSS).

FEATURES AND BENEFITS

  • Plasmid-based spike-ins of 5 key MSI biomarkers typically analyzed in molecular assays that measure MSI in cancer patent samples
  • Offered as tumor-normal matched pairs per AF level
  • Each biomarker blended at two AF levels – 5% and 20% - to support assay LoD determinations and accurate MSI detection in patient samples
  • Variant AFs quantitated by ddPCR and qPCR assays
  • Normal background DNA is a highly characterized GM24385 human genomic DNA known to be microsatellite stable (MSS)
  • Manufactured within cGMP compliant and ISO 13485 certified facilities

Seraseq MSI Reference Panel Mix AF5% and AF20%

Doc type
Package Insert

Seraseq MSI Reference Panel Mix AF5%

Doc type
Technical Product Report
Lot #
10517733

Seraseq MSI Reference Panel Mix

Doc type
Product Sheet
Product Specifications -  Seraseq MSI Reference Panel Mix AF5%
# of variants 5
Allele Frequency 5%
Concentration 20 ng/µL
Fill Size 15 µl
Total DNA 300 ng
Number of vials 2 (tumor-normal matched)
Matrix TE Buffer

 

Marker Gene Chromosome

Position 
(hg19 based)

Comment
BAT-25 KIT (intron16) chr4 55598211 25T->19T
BAT-26 MSH2 (intron5) chr2 47641559 27A -> 17A
NR-21 SLC7A8 (5’UTR) chr14 23652346 21A -> 13A
NR-24 ZNF2 (3’UTR) chr2 95849361 23T -> 17T

MONO-271
MAP4K3 (intron 3)
chr2
39573062 27A -> 21A
MAP4K3 (intron13) 39536690

1There is ambiguity in the literature on the MONO-27 locus so two constructs are included in the product to ensure compatibility (see Bacher J, Halberg R,  Kent-First M, Wood KV. “Methods and kits for detecting mutations” US Patent US20090068646A1 issued March 12, 2009; and Pino MS, Chung DC. “Application of molecular diagnostics for the detection of Lynch syndrome.” Expert review of molecular diagnostics vol. 10,5 (2010): 651-65. doi:10.1586/erm.10.45).